Poster at ECCB 2016, The Hague, Netherlands.
Invited talk by Johannes Köster at the Broad Institute, Boston 2015.
Introduction to Snakemake. Tutorial Slides presented by Johannes Köster at the GCB 2015, Dortmund, Germany.
Invited talk by Johannes Köster at the DTL Focus Meeting: “NGS Production Pipelines”, Dutch Techcentre for Life Sciences, Utrecht 2014.
Taming Snakemake by Jeremy Leipzig, Bioinformatics software developer at Children’s Hospital of Philadelphia, 2014.
“Snakemake makes … snakes?” - An Introduction by Marcel Martin from SciLifeLab, Stockholm 2015
“Workflow Management with Snakemake” by Johannes Köster, 2015. Held at the Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute
These resources are not part of the official documentation.
A number of tutorials on the subject “Tools for reproducible research”
Snakemake workflow used for the Kallisto paper
An alternative tutorial for Snakemake
An Emacs mode for Snakemake
Flexible bioinformatics pipelines with Snakemake
Sandwiches with Snakemake
A visualization of the past years of Snakemake development
Japanese version of the Snakemake tutorial
Basic and advanced french Snakemake tutorial.
Mini tutorial on Snakemake and Bioconda
Snakeparse: a utility to expose Snakemake workflow configuation via a command line interface